Cardiac.db
	Contains various chemical shift files in various formats used in the example runs.
	Also contains examples of *.index files.

cDomain-iha3
	This example shows a smaller database where all input files are contained
	in one directory. It also demonstrates how to customize the window size and
	placement and widget colors via the ./orbplus.defaults file.
	The histogram is shown in black and white.
		Input: nhsqc_res.xpk
		Database: cDomain proteins
		Index File: orbplus_iha3.index - Interhelical angles with 3 regions 

l48q-iha
	A simple example where we specify the input and output files in ./orbplus.defaults.
	If ./orbplus.defaults does not exist, the software also checks
	$HOME/.orbplus.defaults.
		Input: l48q.xpk
		Database: Cardiac.db (nDomain)
		Index File: orbplus_iha.index - Interhelical angles with 2 regions

l48q-imr
	This is the example which Ian Robertson presents in the publication. It was done
	on an older version (1.0.x) of orbplus which used a different index file structure.
	After converting to the new file structure, it runs the same as before. Note that
    there are no error bounds given for the inter-helical angles in the Index file and
	PDB codes are used to identify the proteins.
		Input: l48q.xpk
		Database: Cardiac.db (nDomain)
		Index File: orbplus_imr.index - Interhelical angles with 2 regions

l48q-oc
	An example using the open/close version of the database index file.
		Input: l48q.xpk
		Database: Cardiac.db (nDomain)
		Index File: orbplus_oc.index - open/close percent model 

test-args
	Test all the command line arguments to orbplus (see startup.sh).
	Also, use minimal version of orbplus.defaults to see how the 
	software defaults look. 
		Input: l48q.xpk
		Database: Cardiac.db (nDomain) 
		Index File: orbplus_iha.index - Interhelical angles with 2 regions 

test-bmrb
	This example also tests the reading of bmrb formatted files.
		Input: l48q.xpk
		Database: Cardiac.db (nDomain)
		Index File: orbplus_oc_bmrb.index - open/close percent model 

test-nv5
	This example also tests the reading of nmrview5 formatted files.
		Input: l48q.xpk
		Database: Cardiac.db (nDomain)
		Index File: orbplus_oc_nv5.index - open/close percent model 

test-nvj
	This example also tests the reading of nmrviewj formatted files.
		Input: l48q.xpk
		Database: Cardiac.db (nDomain)
		Index File: orbplus_oc_nvj.index - open/close percent model 

test-pymol
	Use pymol to see where the selected residues from orbplus are located.
	This example shows how the user can re-define the location of pymol, or
	the input pdb file, or even the default pymol script (orbplus.pml).
		Input: l48q.xpk
		Database: Cardiac.db (nDomain)
		Index File: orbplus_iha.index - Interhelical angles with 2 regions

test-small
	This example was used to make small layout for the orbplus website. See
	the customization in the orbplus.defaults file.
		Input: l48q.xpk
		Database: Cardiac.db (nDomain) 
		Index File: orbplus_iha.index - Interhelical angles with 2 regions