***** orbplus - 1.1.1 - Mon Jun 20 10:08:13 MDT 2011
***** Tcl version: 8.5

This file can be viewed by clicking 'Show log file' in the 'Output' menu item.
 
Starting orbplus initialization...
 Help files are in: '/Users/rbo/proj/orbplus/starkit/lib/docs/index.html'.
 Software Defaults: /Users/rbo/proj/orbplus/starkit/lib/defaults 
 User Defaults: /Users/rbo/proj/orbplus/test/cDomain-iha3/orbplus.defaults 
 Output directory: /Users/rbo/proj/orbplus/test/cDomain-iha3/./results 
 Log file: /Users/rbo/proj/orbplus/test/cDomain-iha3/./results/orbplus.log 
 Location of pymol: /usr/local/bin/pymol 
 Software to open html documentation: open 
Done orbplus initialization

Processing database index...
 Read REFERENCE: '/Users/rbo/proj/orbplus/test/cDomain-iha3/./nhsqc_Ca.xpk'
 Read PROTEIN: '/Users/rbo/proj/orbplus/test/cDomain-iha3/./nhsqc_cRp40.xpk'
 Read PROTEIN: '/Users/rbo/proj/orbplus/test/cDomain-iha3/./nhsqc_EGCg.xpk'
 Read PROTEIN: '/Users/rbo/proj/orbplus/test/cDomain-iha3/./nhsqc_EMD.xpk'
 
 Save REFERENCE data: ./orbplus_iha3.index
 Save PROTEIN data, computing vectors and variables...
 **Warning: Cannot set vector for residue=94
 **Warning: Cannot set vector for residue=95
 **Warning: Cannot set vector for residue=96
 **Warning: Cannot set vector for residue=97
 **Warning: Cannot set vector for residue=99
 **Warning: Cannot set vector for residue=103
 **Warning: Cannot set vector for residue=108
 **Warning: Cannot set vector for residue=109
 **Warning: Cannot set vector for residue=114
 **Warning: Cannot set vector for residue=118
 **Warning: Cannot set vector for residue=119
 **Warning: Cannot set vector for residue=120
 **Warning: Cannot set vector for residue=130
 **Warning: Cannot set vector for residue=133
 **Warning: Cannot set vector for residue=136
 **Warning: Cannot set vector for residue=139
 **Warning: Cannot set vector for residue=142
 **Warning: Cannot set vector for residue=144
 **Warning: Cannot set vector for residue=147
 **Warning: Cannot set vector for residue=151
 **Warning: Cannot set vector for residue=152
 **Warning: Cannot set vector for residue=155
 **Warning: Cannot set vector for residue=156
 Calculate averaged protein in the database...
 Calculations involving database and input data...
End
 Calculations involving input data and averaged database entry...
Done processing database index.

Processing Input File...
 Read input: './nhsqc_res.xpk'
 Peaks read: 69
 Save input data and computing vectors...
 **Warning: Cannot set vector for residue=102
 **Warning: Cannot set vector for residue=108
 **Warning: Cannot set vector for residue=135
 Calculations involving input data and PROTEINS...
End
 Calculations involving input data and averaged database entry...
 **Warning: Cannot set vector for residue=102
 **Warning: Cannot set vector for residue=108
 **Warning: Cannot set vector for residue=135
Done processing Input File