# stc app-defaults file - Jan 2006 


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#
# These options are specific for the user's data
#
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#
# Default system type  (choices are P_BIND P_UNFOLD P_OLIG)
# binding/unfolding/oligomer
#
*sys_mode: 		P_BIND

#
# Specify your output directory. This directory does not get
# created, it must already exist! Usually you leave this item
# blank and let the software find a place to put any output.
#
*out_dir:

#
# Here you can specify a different default amino acid table.
# Start with a copy of the default table in INSTALL/lib/amino.def
# and add the missing entries. 
#
# eg *amino_def: /Users/me/stc/custom.amino.def
#
*amino_def:	

#
# If you want stc to automatically startup with your input pdb files, you can
# enter them here.
#   pdb1 = complex/oligomer/unfolded structure 
#   pdb2 = ligand/monomer1/folded structure 
#   pdb3 = enzyme/monomer2 structure  
#
*pdb1: 
*pdb2: 
*pdb3: 

#
# If you calculate your own corresponding accessible surface area
# files, you can enter them here.
#
*acc1: 
*acc2: 
*acc3: 

#
# Sometimes the user has experiment data for Sbb and Sex->u
# which is used in calculating Sconf (can be entered within stc)
#   free1 = ligand/folded/monomer1
#   free2 = enzyme/monomer2
#
*sconf_free1:
*sconf_free2:

#
# Set any residues which are unfolding
# For example: *res_unf: 64 65 66 67 68 69
#
*res_unf:

#
# Default temperature
#
*temperature: 25.0

#
# You may want to enter your own value for total sConf.  
#
*thermo_sconf:

#
# Specify new output file names for basic and detailed results
#
*out_basic: 
*out_detail: 

#
# Where do I write out the stc log file
#
*log: 			./stc.log


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#
# These options deal with colors, fonts, and presentation issues
# of stc.
#
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#
# default place to place main window
#
*main_geometry: +50+50
#
# subscript font and offsets from normal text placement
#
*subscript_font: 		8x13
*subscript_offset: 		-2
*superscript_offset:	6
#
# font to display special mathematical characters
#
*symbol_font: -adobe-symbol-medium-r-normal--17-*-*-*-*-*-adobe-fontspecific
#
# width of file entry fields (number of characters)
#
*file_width: 50
#
# default colors and settings (generic widgets)
#
*font: 					8x13
*foreground: 			white
*background: 			steel blue
*highlightBackground:	steel blue
*highlightColor:		steel blue
*activeBackground:		red
*selectColor: 			PaleVioletRed
*selectBackground:		PaleVioletRed
*Button.Background:		light sky blue
*Button.Foreground:		black
*Entry.Background:		light steel blue
*Entry.Foreground:		black
*Message.aspect:		1500
*Text.BorderWidth: 		0	
*Text.Font:				-bitstream-courier-medium-r-normal--0-0-0-0-m-0-iso8859-1
*results.text.background:		black
#
# settings for the histograms 
#
*Canvas.font:			-adobe-courier-bold-r-normal--16-*-*-*-m-*-iso8859-1
*Canvas.Background:		steel blue
*histo_geometry:		800x500
*line1_color: 			red    
*line1_shape: 			oval
*line1_size: 			3
*line2_color: 			blue	
*line2_shape: 			rect
*line2_size: 			3
*axis_color:			black
*xStart:				90
*yStart:				70
*yLabOffset:			20
*xScaleOffset:			20
*xTics:					9
*yTics:					7

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#
# Software development customization
#
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# stc window header image file
*head_image:
# location of stc help files
*help_file:
# location of the directory containing programs stc wants to call 
*bin_dir:
# location of the script to fix pdb files 
*fix_pdb:
# location of the program which calculates ASA of a molecule 
*calc_asa:
# location of the program which calculates thermodynamics of a molecule 
*thermo_proc: