######################################################################## # System defaults for stc ######################################################################## # # Specify the program for opening the help files included in the software # This can be a favorite browser or "open" in macosx. #*browser: open ####################################################### # Main window ####################################################### # # geometry (just specify location of the window) #*main_geometry: +100+25 # Default system type (choices are P_BIND P_UNFOLD P_OLIG) # binding/unfolding/oligomer #*sys_mode: P_BIND # Specify your output directory. #*write_dir: # If you want stc to automatically startup with your input pdb files, you can # enter them here. # pdb1 = complex/oligomer/unfolded structure # pdb2 = ligand/monomer1/folded structure # pdb3 = enzyme/monomer2 structure #*pdb1: #*pdb2: #*pdb3: # If you calculate your own corresponding accessible surface area # files, you can enter them here. #*acc1: #*acc2: #*acc3: # Here you can specify a different default amino acid table. # Start with a copy of the default table in INSTALL/lib/amino.def # and add the missing entries. # # eg *amino_def: /Users/me/stc/custom.amino.def # #*amino_def: # Sometimes the user has experiment data for Sbb and Sex->u # which is used in calculating Sconf (can be entered within stc) # free1 = ligand/folded/monomer1 # free2 = enzyme/monomer2 # #*sconf_free1: #*sconf_free2: # Set any residues which are unfolding # For example: *res_unf: 64 65 66 67 68 69 #*res_unf: # Default temperature #*temperature: 25.0 # You may want to enter your own value for total sConf. #*thermo_sconf: # Batch variables #*batch_vars: "DGbind Kd" # Specify pdb directory for batch mode #*pdb_dir: ######################################################################## ######################################################################## # # These options deal with colors, fonts, and presentation issues # of stc. # ######################################################################## ######################################################################## # symbol font, subscript font and offsets from normal text placement #*subscript_font: 8x13 #*subscript_offset: -4 #*superscript_offset: 8 #*fixed_font: -bitstream-courier-medium-r-normal--0-0-0-0-m-0-iso8859-1 #*Text.Font: -bitstream-courier-medium-r-normal--0-0-0-0-m-0-iso8859-1 # width of file entry fields (number of characters) #*file_width: 50 # set different default colors and settings (generic widgets) #*font: 8x13 #*foreground: white #*background: steel blue #*highlightBackground: steel blue #*highlightColor: steel blue #*selectColor: red #*selectForeground: red #*selectBackground: red #*Message.aspect: 1500 #*Text.BorderWidth: 0 #*Text.Font: -bitstream-courier-medium-r-normal--0-0-0-0-m-0-iso8859-1 #*Button.Background: light sky blue #*Button.Foreground: black #*selectColor: PaleVioletRed #*selectBackground: PaleVioletRed *reswin.text.Background: light steel blue *Entry.Background: light steel blue *Entry.Foreground: black *activeBackground: red # # settings for the histograms # #*line1_color: red #*line2_color: blue #*line1_shape: oval #*line2_shape: rect #*line1_size: 3 #*line2_size: 3 #*canvas_geometry: 800x400 #*axis_color: black #*title_color: black #*xStart: 90 #*yStart: 70 #*xTics: 9 #*yTics: 7 #*yLabOffset: 20 #*xScaleOffset: 20 #*bgColor: white #*Canvas.font: -adobe-courier-bold-r-normal--16-*-*-*-m-*-iso8859-1 #*Canvas.Background: steel blue